synbiopython
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Introduction
Synbiopython package
synbiopython
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C
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A
access_sbolvalidator() (synbiopython.genbabel.gensbolconv.GenSBOLconv.GenSBOLconv static method)
add_content() (synbiopython.lab_automation.containers.Well.Well method)
add_transfer() (synbiopython.lab_automation.picklist.PickList.PickList method)
addAssignmentRule() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addCompartment() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addEvent() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addInitialAssignment() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addParameter() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addRateRule() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addReaction() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
addSpecies() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
apply() (synbiopython.lab_automation.picklist.Transfer.Transfer method)
C
capacity (synbiopython.lab_automation.containers.Well.Well attribute)
check() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
components_as_string() (synbiopython.lab_automation.containers.WellContent.WellContent method)
compute_dnalength() (synbiopython.genbabel.simplednaplot.SimpleDNAplot.SimpleDNAplot static method)
concentration() (synbiopython.lab_automation.containers.WellContent.WellContent method)
coordinates() (synbiopython.lab_automation.containers.Well.Well property)
D
dead_volume_per_transfer_class (synbiopython.lab_automation.containers.Well.Well attribute)
E
empty_completely() (synbiopython.lab_automation.containers.Well.Well method)
enforce_maximum_dispense_volume() (synbiopython.lab_automation.picklist.PickList.PickList method)
execute_inlineomex() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen static method)
export_omex() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen method)
export_outputfile() (synbiopython.genbabel.gensbolconv.GenSBOLconv.GenSBOLconv method)
export_plasmidmap() (synbiopython.genbabel.gensbolconv.GenSBOLconv.GenSBOLconv static method)
export_sbml() (synbiopython.genbabel.sbmlgen.SBMLgen.SBMLgen static method)
F
find_best_volume_unit() (in module synbiopython.lab_automation.tools)
find_between() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen static method)
find_unique_well_by_condition() (synbiopython.lab_automation.containers.Plate.Plate method)
find_unique_well_containing() (synbiopython.lab_automation.containers.Plate.Plate method)
G
GenSBOLconv (class in synbiopython.genbabel.gensbolconv.GenSBOLconv)
get_omexfilename() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen static method)
get_organism_name() (in module synbiopython.codon.taxonomy_utils)
get_outputfile_extension() (synbiopython.genbabel.gensbolconv.GenSBOLconv.GenSBOLconv static method)
get_sbml_biomodel() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen static method)
get_table() (in module synbiopython.codon.table)
get_tax_id() (in module synbiopython.codon.taxonomy_utils)
get_well_at_index() (synbiopython.lab_automation.containers.Plate.Plate method)
getCompartment() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getDocument() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getEvent() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getfilename() (in module synbiopython.genbabel.utilities)
getInitialAssignment() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfCompartments() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfEvents() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfInitialAssignments() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfParameters() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfReactions() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfRules() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getListOfSpecies() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getModel() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getParameter() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getReaction() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getRule() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
getSpecies() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
H
human_seq_size() (in module synbiopython.lab_automation.tools)
human_volume() (in module synbiopython.lab_automation.tools)
I
index_in_plate() (synbiopython.lab_automation.containers.Well.Well method)
index_to_wellname() (synbiopython.lab_automation.containers.Plate.Plate method)
is_after() (synbiopython.lab_automation.containers.Well.Well method)
is_empty() (synbiopython.lab_automation.containers.Well.Well property)
iter_wells() (synbiopython.lab_automation.containers.Plate.Plate method)
iterate_sources_tree() (synbiopython.lab_automation.containers.Well.Well method)
L
list_filtered_wells() (synbiopython.lab_automation.containers.Plate.Plate method)
list_well_data_fields() (synbiopython.lab_automation.containers.Plate.Plate method)
list_wells_in_column() (synbiopython.lab_automation.containers.Plate.Plate method)
list_wells_in_row() (synbiopython.lab_automation.containers.Plate.Plate method)
M
make_empty() (synbiopython.lab_automation.containers.WellContent.WellContent method)
merge_picklists() (synbiopython.lab_automation.picklist.PickList.PickList static method)
module
synbiopython
synbiopython.codon
synbiopython.codon.table
synbiopython.codon.taxonomy_utils
synbiopython.codon.utils
synbiopython.genbabel
synbiopython.genbabel.gensbolconv
synbiopython.genbabel.gensbolconv.GenSBOLconv
synbiopython.genbabel.sbmlgen
synbiopython.genbabel.sbmlgen.SBMLgen
synbiopython.genbabel.sbmlgen.simplesbml
synbiopython.genbabel.sedmlomexgen
synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen
synbiopython.genbabel.simplednaplot
synbiopython.genbabel.simplednaplot.SimpleDNAplot
synbiopython.genbabel.utilities
synbiopython.lab_automation
synbiopython.lab_automation.containers
synbiopython.lab_automation.containers.Plate
synbiopython.lab_automation.containers.Well
synbiopython.lab_automation.containers.WellContent
synbiopython.lab_automation.picklist
synbiopython.lab_automation.picklist.PickList
synbiopython.lab_automation.picklist.Transfer
synbiopython.lab_automation.tools
N
NoUniqueWell
O
optimise() (in module synbiopython.codon.utils)
P
phrasedmltosedml() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen method)
PickList (class in synbiopython.lab_automation.picklist.PickList)
Plate (class in synbiopython.lab_automation.containers.Plate)
plot_circuit() (synbiopython.genbabel.simplednaplot.SimpleDNAplot.SimpleDNAplot method)
pretty_summary() (synbiopython.lab_automation.containers.Well.Well method)
R
replace_nans_in_dict() (in module synbiopython.lab_automation.tools)
restricted_to() (synbiopython.lab_automation.picklist.PickList.PickList method)
return_column() (synbiopython.lab_automation.containers.Plate.Plate method)
return_row() (synbiopython.lab_automation.containers.Plate.Plate method)
round_at() (in module synbiopython.lab_automation.tools)
run_sbolvalidator() (synbiopython.genbabel.gensbolconv.GenSBOLconv.GenSBOLconv method)
S
sample() (in module synbiopython.codon.utils)
SBMLgen (class in synbiopython.genbabel.sbmlgen.SBMLgen)
sbmlModel (class in synbiopython.genbabel.sbmlgen.simplesbml)
sbmltoantimony() (synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen.SEDMLOMEXgen static method)
SEDMLOMEXgen (class in synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen)
set_circuit_design() (synbiopython.genbabel.simplednaplot.SimpleDNAplot.SimpleDNAplot method)
setLevelAndVersion() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
SimpleDNAplot (class in synbiopython.genbabel.simplednaplot.SimpleDNAplot)
simulate() (synbiopython.lab_automation.picklist.PickList.PickList method)
sorted_by() (synbiopython.lab_automation.picklist.PickList.PickList method)
subtract_content() (synbiopython.lab_automation.containers.Well.Well method)
synbiopython
module
synbiopython.codon
module
synbiopython.codon.table
module
synbiopython.codon.taxonomy_utils
module
synbiopython.codon.utils
module
synbiopython.genbabel
module
synbiopython.genbabel.gensbolconv
module
synbiopython.genbabel.gensbolconv.GenSBOLconv
module
synbiopython.genbabel.sbmlgen
module
synbiopython.genbabel.sbmlgen.SBMLgen
module
synbiopython.genbabel.sbmlgen.simplesbml
module
synbiopython.genbabel.sedmlomexgen
module
synbiopython.genbabel.sedmlomexgen.SEDMLOMEXgen
module
synbiopython.genbabel.simplednaplot
module
synbiopython.genbabel.simplednaplot.SimpleDNAplot
module
synbiopython.genbabel.utilities
module
synbiopython.lab_automation
module
synbiopython.lab_automation.containers
module
synbiopython.lab_automation.containers.Plate
module
synbiopython.lab_automation.containers.Well
module
synbiopython.lab_automation.containers.WellContent
module
synbiopython.lab_automation.picklist
module
synbiopython.lab_automation.picklist.PickList
module
synbiopython.lab_automation.picklist.Transfer
module
synbiopython.lab_automation.tools
module
T
to_dict() (synbiopython.lab_automation.containers.Plate.Plate method)
(synbiopython.lab_automation.containers.Well.Well method)
(synbiopython.lab_automation.containers.WellContent.WellContent method)
to_pandas_dataframe() (synbiopython.lab_automation.containers.Plate.Plate method)
to_plain_string() (synbiopython.lab_automation.picklist.PickList.PickList method)
(synbiopython.lab_automation.picklist.Transfer.Transfer method)
to_plain_textfile() (synbiopython.lab_automation.picklist.PickList.PickList method)
to_short_string() (synbiopython.lab_automation.picklist.Transfer.Transfer method)
toSBML() (synbiopython.genbabel.sbmlgen.simplesbml.sbmlModel method)
total_transferred_volume() (synbiopython.lab_automation.picklist.PickList.PickList method)
Transfer (class in synbiopython.lab_automation.picklist.Transfer)
TransferError
V
volume() (synbiopython.lab_automation.containers.Well.Well property)
W
Well (class in synbiopython.lab_automation.containers.Well)
well_class (synbiopython.lab_automation.containers.Plate.Plate attribute)
WellContent (class in synbiopython.lab_automation.containers.WellContent)
wellname_to_index() (synbiopython.lab_automation.containers.Plate.Plate method)
wells_grouped_by() (synbiopython.lab_automation.containers.Plate.Plate method)
wells_sorted_by() (synbiopython.lab_automation.containers.Plate.Plate method)
with_new_volume() (synbiopython.lab_automation.picklist.Transfer.Transfer method)
writeCode() (in module synbiopython.genbabel.sbmlgen.simplesbml)
writeCodeFromFile() (in module synbiopython.genbabel.sbmlgen.simplesbml)
writeCodeFromString() (in module synbiopython.genbabel.sbmlgen.simplesbml)
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